Recount exploration

Setup

Exploring the GTEx dataset from Recount3

This documentation contains the summary of datasets that are currently hosted on BITHub. It also includes levels of information (gene, transcript, exon) and overall summary statistics.

Metadata variables from Recount

Annotations from Recount using FANTOM-CAT

## [1] 63856  2931

Annotations of GTEx genes retrieved via recount3 using Gencode

## [1] 124047   2931

Annotations of GTEx genes retrieved via recount3 using Gencode

Genes similar between Gencode and FANTOM-CAT

• What genes are missing from each data-frame?

Gene types in Gencode only annotations

Gene types in FANTOM-CAT Only annotations

Data for BITHub for GTEx

Annotations of GTEx genes retrieved via GTEx portal preprocessed for BITHub